Salvia genomes

Submitted by jaiswalp on

Following is a list of Salvia genomes available in the public domain and accessible via the SalviaGDB.

Visit the Genome browser and click on the 'Genome' in the menu to select the respective genome.

Species Genome assembly | Version | Source | Publication Available in the genome browser Sequenced genome size Gene counts Repeat content

Salvia hispanica
(Chia)

Name and version: Sh_ref | v1.0
Source: Jaiswal Lab at Oregon State University
Publication: TBD

Yes

 303.6 Mb 48,090 42.2%

Salvia hispanica
(Chia)

Name and version: Wang et al | V1.0
Source: https://genhua.tll.org.sg/ and at the China National GeneBank DataBase under Bioproject no. CNP0002868 (Assembly ID: CNA0047366), 
Publication: Wang et al. 2022. https://doi.org/10.1016/j.xplc.2022.100326

Yes

 347.6 Mb 31,069 45.7%
Salvia hispanica
(Chia)		 Name and version: Li et al. | V1.0
Source: https://doi.org/10.6084/m9.figshare.21976526.v1
Publication: Li et al. 2023.  https://doi.org/10.3389/fpls.2023.1102715 		 Yes 361.7 Mb 35,850 53.5%

Salvia hispanica
(Chia)

Name and version: UniMelb_Shisp_WGS_1.0/Melbourne | v1.0 |
Source: NCBI: GCA_023119035.1 
Publication: NA

Yes

 344.4 Mb 36,995 NA

Salvia splendens
(Scarlet sage)

Name and version: SspV2 | v2.0 |
Source: NCBI: GCA_004379255.2 | GigaScience: https://doi.org/10.1093/gigascience/giy068
Publication: Jia et al. 2021. https://doi.org/10.1038/s41438-021-00614-y

Yes

 808 Mb 54,008 57.52%

Salvia miltiorrhiza
(Danshen)

Name and version: SmiV1| v1.0 |
Source: ENA: PRJNA287594 | GigaDB: http://dx.doi.org/10.5524/100164
Publication: Song et al 2020. https://doi.org/10.1002/tpg2.20041

Yes

 594.75 Mb 32,483 64.84%
Salvia bowleyana
(Nan Danshen)		 Name and version: Sh_ref | v1.0
Source: https://ngdc.cncb.ac.cn/search/?dbId=gwh&q=GWHASIU00000000
Publication: Zheng et al. 2021. https://doi.org/10.1111/jipb.13085		 Yes 462.44 Mb 44,044 58.7%
Salvia rosmarinus
(Rosmarinus offcinalis, rosemary)		 Name and version: Sh_ref | v1.0
Source: https://doi.org/10.6084/m9.figshare.21443223.v1
Publication: Han et al. 2023. https://doi.org/10.1111/tpj.16087		 Yes 1.03 Gb 49,858 72.72%
Salvia officnalis
(Sage)		 Name and version: Saoff | v1.0
Source: https://ngdc.cncb.ac.cn/gwh/Genome/1822/show
Publication: Li et al 2022. https://doi.org/10.1016/j.celrep.2022.111236		 NA 480 Mb 31,713 61.67%